[ Readings for October 9 | PHYLOGENY READING LIST | ] ...Phylogeny Reading List Dunn et al 2008 Broad phylogenetic sampling improves the resolution of the animal tree of life Nature 452 745 749 Helmberg A M Sempere L F Moy V N Donoghue P C J and Peterson K J 2008 MicroRNAs and the advent of vertebrate morphological complexity PNAS 105 2946 2950 Papillon...
.dochttp://courses.washington.edu/biol415/Phylogenies.doc
... Encoded by endogenous genes ssRNA with stem loop structure Partial complement to the 3 UTR of target genes Recognize multiple targets Regulate translation and RNA stability siRNA short interfering RNA 21 25 nt Mostly exogenous origin dsRNA precursors May be target specific Regulate mRNA stability microRNAs...
.ppthttp://memo.cgu.edu.tw/kwang-huei/handout/20090108_microRNA.ppt
[ (PPT) ] ...arget mRNA abundance dilutes microRNA and siRNA activity Concept Small RNAs with many targets downregulate each individual target to a lesser extent microRNAs induce different amounts of downregulation Meta analysis of transfection studies 178 transfection experiments in HeLa and HCT116 cell lines...
.ppthttp://cbio.mskcc.org/~aarvey/Arvey_Keystone.ppt
...icroRNA Cass Jabara Exam Questions What are microRNAs and what is their primary function Where are microRNAs commonly found in the human genome and how does this correlate to disease Background miRNA miR microRNA Eukaryotes S S RNA 19 to 25 nt Non coding Regulates gene expression Evolutionary...
.ppshttp://people.wcsu.edu/wonge/bio535/microRNA.pps
...wo short pieces MicroRNA Alternative splicing MicroRNA What is microRNA Genome has protein coding genes It also has genes that code for RNA e g transfer RNA that is used in translation is coded by genes e g ribosomal RNA that forms part of the structure of the ribosome is also coded by genes microRNAs...
.ppthttp://veda.cs.uiuc.edu/courses/fa09/cs466/lectures/Lecture25.ppt
... microRNAs listed in miRBase v 14 0 In addition the library targets 34 proprietary miRPlus microRNAs not yet in miRBase miRPlus sequences can be obtained under a non disclosure agreement Please contact us at www exiqon com contact Amount 0 25 nmol of each oligonucleotide dried down List of all human...
.xls.../www.exiqon.com/ls/Documents/Scientific/KD_library_hsa_v12_layout.xls
... with 88 miRCURY LNATM microRNA Knockdown Probes Plate 15 with 52 miRCURY LNATM microRNA Knockdown Probes 96 well plates Axygen P 96 450V www axygen com Coverage The library targets 627 human microRNAs listed in miRBase v 12 0 For any questions please contact us at www exiqon com contact Amount 0 25...
.xls.../www.exiqon.com/ls/Documents/Scientific/KD_library_mmu_v12_layout.xls
...Axtell and Bartel Antiquity of microRNAs and their targets in land plants Supplemental Table 6 Empirical miRNA target discovery and validation miRNA miRNA complementary site specific oligo Species Number of candidate cDNAs Candidate 5 RACE oligo 5 RACE result Sequencea 3 b Accession 156 157...
.xls...upplemental Material/Axtell & Bartel05 Supp/Supplemental_Table_6.xls
...Axtell and Bartel Antiquity of microRNAs and their targets in land plants Supplemental Table 6 Empirical miRNA target discovery and validation miRNA miRNA complementary site specific oligo Species Number of candidate cDNAs Candidate 5 RACE oligo 5 RACE result Sequencea 3 b Accession 156 157...
.xls...upplemental Material/Axtell & Bartel05 Supp/Supplemental_Table_6.xls
...OLLOQUIUM Department of Computer Science and Engineering University of South Carolina Study of microRNAs a Biology Problem with Computational Challenges Xuefeng Zhou Department of and Computer Science and Engineering Washington University Date April 10 2008 Time 1530 1700 Place Swearingen 3C02...
.dochttp://www.cse.sc.edu/~mgv/colloquia07/ZhouF.doc
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